Selenocysteine insertion sequence 1
Histone 3' UTR stem-loop
HIV Rev response element
Iron response element I
RNase E 5' UTR element
Enteroviral 3' UTR element
Enterovirus cis-acting replication element
Vimentin 3' UTR protein-binding region
Alpha operon ribosome binding site
Nanos 3' UTR translation control element
Coronavirus 3' stem-loop II-like motif (s2m)
Coronavirus 3' UTR pseudoknot
Tombusvirus 5' UTR
ctgf/hcs24 CAESAR
Human immunodeficiency virus type 1 dimerisation initiation site
Tombusvirus 3' UTR region IV
GAIT element
Renin stability regulatory element (REN-SRE)
Coronavirus packaging signal
G-CSF factor stem-loop destabilising element (SLDE)
Potato virus X cis-acting regulatory element
Flavivirus 3' UTR cis-acting replication element (CRE)
Bovine leukaemia virus RNA packaging signal
Citrus tristeza virus replication signal
Rubella virus 3' cis-acting element
Alfalfa mosaic virus RNA 1 5' UTR stem-loop
K10 transport/localisation element (TLS)
Retrovirus direct repeat 1 (dr1)
Tombus virus defective interfering (DI) RNA region 3
Human rhinovirus internal cis-acting regulatory element (CRE)
FIE3 (ftz instability element 3') element
Spi-1 (PU.1) 5' UTR regulatory element
Tymovirus/Pomovirus/Furovirus tRNA-like 3' UTR element
traJ 5' UTR
Alfalfa mosaic virus coat protein binding (CPB) RNA
Interferon gamma 5' UTR regulatory element
Hepatitis C virus (HCV) cis-acting replication element (CRE)
Bamboo mosaic potexvirus (BaMV) cis-regulatory element
Pospiviroid RY motif stem loop
Gammaretrovirus core encapsidation signal
HIV primer binding site (PBS)
HIV gag stem loop 3 (GSL3)
Poxvirus AX element late mRNA cis-regulatory element
Infectious bronchitis virus D-RNA
Enterovirus 5' cloverleaf cis-acting replication element
Bamboo mosaic virus satellite RNA cis-regulatory element
UPSK RNA
RtT RNA
Luteovirus cap-independent translation element (BTE)
UnaL2 LINE 3' element
Hairy RNA localisation element (HLE)
Cardiovirus cis-acting replication element (CRE)
p27 cis-regulatory element
Mason-Pfizer monkey virus packaging signal
U1A polyadenylation inhibition element (PIE)
Apolipoprotein B (apoB) 5' UTR cis-regulatory element
Japanese encephalitis virus (JEV) hairpin structure
Rous sarcoma virus (RSV) primer binding site (PBS)
Hepatitis C virus stem-loop VII
Hepatitis C stem-loop IV
Togavirus 5' plus strand cis-regulatory element
Hepatitis C virus 3'X element
Potassium channel RNA editing signal
S-element
Coronavirus SL-III cis-acting replication element (CRE)
Human parechovirus 1 (HPeV1) cis regulatory element (CRE)
Turnip crinkle virus (TCV) repressor of minus strand synthesis H5
Rotavirus cis-acting replication element (CRE)
Turnip crinkle virus (TCV) core promoter hairpin (Pr)
Tombusvirus internal replication element (IRE)
PyrR binding site
Prion pseudoknot
R2 RNA element
Flavivirus DB element
Hepatitis E virus cis-reactive element
Bicoid 3'-UTR regulatory element
rncO
flavivirus capsid hairpin cHP
Hepatitis C alternative reading frame stem-loop
Gurken localisation signal
sxy 5' UTR element
Wingless localisation element 3 (WLE3)
HBV RNA encapsidation signal epsilon
Cyclic di-GMP-I riboswitch
23S methyl RNA motif
6C RNA
Guanidine-II riboswitch
purD RNA motif
SucA RNA motif
Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
Gag/pol translational readthrough site
Pseudoknot of tRNA-like structure
3'-terminal pseudoknot in PYVV
Pseudoknot of the regulatory region of the repZ gene
Pseudoknot of the regulatory region of the repBA gene
3'-terminal pseudoknot in SPCSV
3'-terminal pseudoknot of CuYV/BPYV
HepA virus 3'-terminal pseudoknot
Pseudoknot of influenza A virus gene
3'-terminal pseudoknot in BYV
Avian HBV RNA encapsidation signal epsilon
Human immunodeficiency virus type 1 major splice donor
HIV-1 stem-loop 3 Psi packaging signal
HIV-1 stem-loop 4 packaging signal
Flavivirus 3'UTR stem loop IV
Retroviral 3'UTR stability element
HIV pol-1 stem loop
3'TE-DR1 translation enhancer element
5'UTR enhancer element
Stem loopII regulatory element in POLB
Listeria sRNA rli52
Listeria sRNA rli53
Listeria sRNA rli56
Listeria sRNA rli59
Listeria sRNA rli61
Listeria sRNA rli62
Listeria snRNA rli51
Listeria sRNA rli54
Human acetyl-coA cholesterol acyltransferase mRNA
ALIL pseudoknot
Barley yellow dwarf virus 5'UTR
iscR stability element
Drosophila rox2 ncRNA
Drosophila rox1 ncRNA
Actino-pnp RNA
Chlorobi-RRM RNA
Downstream peptide RNA
JUMPstart RNA
L17 ribosomal protein downstream element
Lacto-rpoB RNA
Lnt RNA
Moco-II RNA
Pedo-repair RNA
PhotoRC-I RNA
PhotoRC-II RNA
Pseudomon-Rho RNA
Pseudomon-groES RNA
SAM-Chlorobi RNA
SAM-II long loop
Termite-flg RNA
Termite-leu RNA
TwoAYGGAY RNA
atoC RNA
epsC RNA
flg-Rhizobiales RNA
flpD RNA
gabT RNA
gyrA RNA
livK RNA
manA RNA
mraW RNA
msiK RNA
nuoG RNA
pan motif
potC RNA
psaA RNA
psbNH RNA
radC RNA
rmf RNA
rne-II RNA
sucA-II RNA
sucC RNA
traJ-II RNA
wcaG RNA
Guanidine-III riboswitch
yjdF RNA
Editing element of GABA-3 exon 9
Pyrrolysine insertion sequence 1
Selenocysteine insertion sequence 2
Selenocysteine insertion sequence 3
Selenocysteine insertion sequence 4
Selenocysteine insertion sequence 5
Iron response element II
MAT2A 3'UTR stem loop A
MAT2A 3'UTR stem loop B
MAT2A 3'UTR stem loop C
MAT2A 3'UTR stem loop D
MAT2A 3'UTR stem loop E
MAT2A 3'UTR stem loop F
TUC338
Dengue virus SLA
Bacteriophage MS2 operator hairpin
Heat shock protein 83 3' UTR
ClpQY promoter
Turnip crinkle virus 3'UTR
Dianthovirus RNA2 cap-independent translation element
Dianthovirus RNA2 3'UTR stem loops
Tombusvirus 3' cap-independent translation element
Aureusvirus cap-independent translation element
Necrovirus cap-independent translation element
Satellite tobacco necrosis virus cap-independent translation element
Blackcurrant reversion virus cap-independent translation element
Pyrrolysine insertion sequence mtbB
Pyrrolysine insertion sequence mttB
Pyrrolysine insertion sequence TetR
Pyrrolysine insertion sequence transposase 1
Pyrrolysine insertion sequence transposase 2
Pea enation mosaic virus-2 cap-independent translation element
Murine norovirus 3'UTR
Hepatitis A virus (HAV) cis-acting replication element (CRE)
Norovirus cis-acting replication element (CRE)
Avian encephalitis virus (AEV) cis-acting replication element (CRE)
Oocyte entry signal (OES) from oskar mRNA
Pseudoknot PSK3
ABC transporter regulator
Brucella babR 5'UTR
KRAS 3' UTR cis-regulatory element
Hepatitis C virus RNA packaging signal
Hepatitis C virus RNA packaging signal 733
Hepatitis C virus RNA packaging signal 4629
Hepatitis C virus RNA packaging signal 6067
icaR 3'UTR
icaR 5' UTR
GmglnB1 5'UTR
hilD 3'UTR
LDH1 5'UTR
Soft rot Enterobacteriaceae Fwd 6 3'UTR
Soft rot Enterobacteriaceae Rev 39 5'UTR
Soft rot Enterobacteriaceae Rev 42 5'UTR
Hepatitis B virus post-transcriptional regulatory element 1151-1410
Coronavirus 5' stem-loops 1-2
Baculoviridae Nucleocapsid Assembly essential Element
pemK RNA
DUF805b RNA
DUF3800-VI RNA
atpB RNA
Burkholderiales-2 RNA
MDR-NUDIX RNA
ilvB-OMG RNA
Fusobacteriales-1 RNA
RAGATH-32 RNA
HTH-XRE RNA
algC RNA
aspS RNA
COG2908 RNA
COG3860 RNA
DABA-DC-AT RNA
DUF1874 RNA
DUF3577 RNA
DUF3085 RNA
DUF2800 RNA
engA RNA
Fibro-purF RNA
folE RNA
folP RNA
freshwater-2 RNA
FTHFS RNA
gltS RNA
GP20-a RNA
hya RNA
ilvH RNA
ivy-DE RNA
leuA-Halobacteria RNA
lysM-Prevotella RNA
GP20-b RNA
lysM-TM7 RNA
malK-II RNA
malK-III RNA
Rothia-sucC RNA
ssnA RNA
narK RNA
NLPC-P60 RNA
nhaA-II RNA
Peptidase-S11 RNA
PGK RNA
NMT1 RNA
uup RNA
xerDC RNA
terC RNA
malK-I RNA
Rhodo-rpoB RNA
chrB-a RNA
DUF805 RNA
chrB-b RNA
lysM-Actino RNA
Thermales-rpoB RNA
