RgsA sRNA
Photosynthesis regulatory RNA1
Yersinia sRNA 201
DsrA RNA
CsrB/RsmB RNA family
Spot 42 RNA
RprA RNA
OxyS RNA
RyhB RNA
SraB RNA
MicA sRNA
OmrA-B family
ArcZ RNA
SraG RNA
GlmZ RNA activator of glmS mRNA
CsrC RNA family
SraC/RyeA RNA
RybB RNA
SdsR_RyeB RNA
CyaR/Rye RNA
McaS/IsrA RNA
C0465 RNA
C0719 RNA
rydB RNA
C0299 RNA
MicC RNA
GadY
IS102 RNA
IS128 RNA
ryfA RNA
t44 RNA
Glm Y RNA activator of glmS mRNA
PrrB/RsmZ RNA family
RsmY RNA family
sroB RNA
sroC RNA
sroD RNA
sroE RNA
sroH RNA
Qrr RNA
PrrF RNA
RydC RNA
Makes More Granules Regulator RNA (mmgR)
Listeria Hfq binding LhrA
Listeria LhrC
Cyanobacterial functional RNA 1
isrA Hfq binding RNA
isrB Hfq binding RNA
isrC Hfq binding RNA
isrD Hfq binding RNA
isrF Hfq binding RNA
isrG Hfq binding RNA
isrH Hfq binding RNA
isrI Hfq binding RNA
isrJ Hfq binding RNA
isrK Hfq binding RNA
isrL Hfq binding RNA
isrN Hfq binding RNA
isrO Hfq binding RNA
isrP Hfq binding RNA
isrQ Hfq binding RNA
rseX Hfq binding RNA
STnc150 Hfq binding RNA
STnc290 Hfq binding RNA
PinT (STnc440) Hfq binding RNA
STnc490 Hfq binding RNA
STnc500 Hfq binding RNA
STnc560 Hfq binding RNA
sraL Hfq binding RNA
STnc250 Hfq binding RNA
BsrC
BsrF
BsrG
Listeria sRNA rli22
Listeria sRNA rliE
Listeria sRNA rliH
Listeria sRNA rli26
Listeria sRNA rli27
Listeria sRNA rliA
Listeria sRNA rli31
Listeria sRNA rli34
Listeria sRNA rli36
Listeria sRNA rli32
Listeria sRNA rli33
Listeria sRNA rli38
Listeria sRNA rliB
Listeria sRNA rli40
Listeria sRNA rli41
Listeia sRNA rli42
Listeria sRNA rliF
Listeria sRNA rli43
Listeria sRNA rli47
Listeria sRNA rli48
Listeria sRNA rliI
Listeria sRNA rli49
Listeria sRNA sbrA
Listeria sRNA rli28
Listeria sRNA rli37
A. fumigatus sRNA Afu_182
A. fumigatus sRNA Afu_203
A. fumigatus sRNA Afu_254
A. fumigatus sRNA Afu_309
Caulobacter sRNA CC0196
caulobacter sRNA CC0734
caulobacter sRNA CC1840
Caulobacter sRNA CrfA
caulobacter sRNA CC3513
Cauldobacter sRNA CC3552
Caulobacter sRNA CC3664
D. discoideum class II sRNA
Plasmodium RNA of unkown function RUF1
Plasmodium RNA of unknown function RUF2
Plasmodium RNA of unkown function RU6-F3
Plasmodium RNA of unknown function RUF6-5
RNA of unknown function RUF4
C. elegans sRNA ceN115
Caenorhabditis sRNA ceN23-1
Caenorhabditis sRNA ceN56
Nematode sRNA ceN72-3_ceN74-2
Caenorhabditis sRNA ceN93
Pseudomonas sRNA P13
Pseudomonas sRNA P10
Pseudomonas sRNA P14
Pseudomonas sRNA P17
Pseudomonas sRNA P18
Psudomonas sRNA P2
PhrS
Pseudomonas sRNA P27
Pseudomonas sRNA CrcZ
Pseudomonas sRNA P31
Pseudomonas sRNA P35
Pseudomonas sRNA P37
Pseudomonas sRNA P36
Pseudomonas sRNA P5
Pseudomonas sRNA P4
Pseudomonas sRNA P8
Pseudomonas sRNA P6
6S-Flavo RNA
Acido-1 RNA
Acido-Lenti-1 RNA
Bacillaceae-1 RNA
Bacillus-plasmid RNA
Bacteroidales-1 RNA
Bacteroides-1 RNA
Chlorobi-1 RNA
Chloroflexi-1 RNA
Clostridiales-1 RNA
Collinsella-1 RNA
Cyano-1 RNA
Cyano-2 RNA
Dictyoglomi-1 RNA
Flavo-1 RNA
Gut-1 RNA
Lacto-usp RNA
Methylobacterium-1 RNA
Ocean-V RNA
Polynucleobacter-1 RNA
Pseudomon-1/ErsA RNA
Pyrobac-1 RNA
Rhizobiales-2 RNA
STAXI RNA
MarS sRNA
lactis-plasmid RNA
sbcD RNA
Whalefall-1 RNA
RNA S.aureus Orsay G
ASdes TB sRNA
Mycobacterium B11
bablM sRNA
Epstein-Barr virus EBER1
F6 TB sRNA
ffh sRNA
Fumarate/nitrate reductase regulator sRNA
MicX Vibrio cholerae sRNA
pntA sRNA
Pxr regulatory sRNA
rhtB sRNA
rpsB sRNA
RNA Staph. aureus A
RNA Staph. aureus C
RNA Staph. aureus D
RNA Staph. aureus E (RoxS)
RNA Staph. aureus H
rpsL sRNA
SAR11_0636 sRNA
Small pathogenicity island RNA D
RNA Staph. aureus F
caulobacter sRNA CC2171
sraA
tp2
tpke11
Salmonella enterica conserved region STnc30
Salmonella enterica sRNA STnc460
Salmonella enterica sRNA STnc470
Enterobacterial sRNA STnc450
Enterobacterial sRNA STnc630
Enterobacterial sRNA STnc430
Salmonella enterica sRNA STnc420
Enterobacterial sRNA STnc380
Salmonella sRNA STnc390
Salmonella enterica sRNA STnc40
Enterobacterial sRNA STnc410
Salmonella enterica sRNA STnc361
Salmonella enterica sRNA STnc350
Enterobacterial sRNA STnc370
Enterobacterial sRNA STnc340
Salmonella enterica sRNA STnc320
Salmonella enterica sRNA STnc310
Enterobacterial sRNA STnc480
Enterobacterial sRNA STnc70
Salmonella enterica sRNA STnc300
Salmonella enterica sRNA STnc280
Salmonella enterica sRNA STnc590
Salmonella enterica sRNA STnc260
Enterobacterial sRNA STnc240
Enterobacterial sRNA STnc230
Gammaproteobacterial sRNA STnc100
Salmonella enterica sRNA STnc220
Salmonella enterica sRNA STnc210
Enterobacterial sRNA STnc180
Salmonella enterica sRNA STnc170
Enterobacterial sRNA STnc550
Enterobacterial sRNA STnc540
Enterobacteria sRNA STnc130
Enterobacterial sRNA STnc510
rivX sRNA
Translational regulator of tfoXVC
sRNA-Xcc1
Xanthomonas sRNA sX2
Proteobacterial sRNA sX4
Xanthomonadaceae sRNA sX5
Proteobacterial sRNA sX6
Xanthomonas sRNA sX7
Proteobacterial sRNA sX8
Xanthomonas sRNA sX9
Proteobacterial sRNA sX11
Xanthomonas sRNA sX12
Xanthomonadaceae sRNA sX13
Xanthomonas sRNA sX14/Xoo3
Xanthomonadaceae sRNA sX15
Xanthomonadaceae sRNA asX1
Xanthomonas sRNA asX2
Xanthomonas sRNA asX3
Xanthomonas sRNA asX4/Xoo4
Xanthomonas sRNA asX6
Xanthomonadaceae sRNA Xoo1
Xanthomonadaceae sRNA Xoo2
Xanthomonadaceae sRNA Xoo5
Proteobacterial sRNA Xoo8
MtlS RNA
Heliobacter pylori small RNA HPnc0580
Betaproteobacteria toxic small RNA
Mycobacterium sRNA ncrMT1302
Alphaproteobacterial sRNA ar7
Alphaproteobacterial sRNA ar9
Alphaproteobacterial ar14
Alphaproteobacterial ar15
Alphaproteobacterial sRNA ar35
Alphaproteobacterial sRNA ar45
Proteobacterial sRNA psRNA2
Nitrosomonas sRNA psRNA6
Proteobacteria sRNA psRNA14
Bradyrhizobiaceae sRNA BjrC68
Bradyrhizobiaceae sRNA BjrC80
Bradyrhizobiaceae sRNA BjrC174
Alphaproteobacterial sRNA BjrC1505
Cyanobacterial functional RNA 8/9
Cyanobacterial functional RNA 10
Cyanobacterial functional RNA 11
Cyanobacterial functional RNA 13
Cyanobacterial functional RNA 17
Cyanobacterial functional RNA 19
Cyanobacterial functional RNA 20
Cyanobacterial functional RNA 21
h2cR sRNA
Yersinia YenS sRNA
Aar sRNA
SR1 sRNA
SurA sRNA
SurC sRNA
Cia-dependent small RNA csRNA1
FasX small RNA
Staphylococcus sRNA sau-13
Staphylococcus sRNA sau-19
Staphylococcus sRNA sau-27
Staphylococcus sRNA sau-30
Staphylococcus sRNA sau-31
Staphylococcus sRNA sau-41
Staphylococcus sRNA sau-53
Staphylococcus sRNA sau-59
Staphylococcus sRNA sau-63
Staphylococcus sRNA sau-66
Staphylococcus sRNA sau-5949
Staphylococcus sRNA sau-5971
Staphylococcus sRNA sau-6072
Nitrogen stress-induced RNA 1
Pseudomonas sRNA P33
Pseudomonas sRNA P34
Listeria sRNA rli60
Listeria sRNA rliG
VR-RNA
Streptococcus sRNA Spd-sr07
Streptococcus sRNA Spd-sr37
Burkholderia sRNA Bp1_Cand612_SIPHT
Burkholderia sRNA Bp1_Cand684_SIPHT
Burkholderia sRNA Bp1_Cand738_SIPHT
Burkholderia sRNA Bp1_Cand871_SIPHT
Burkholderia sRNA Bp2_Cand287_SIPHT
Streptococcus sRNA SpF01
Streptococcus sRNA SpF03
Streptococcus sRNA SpF10
Streptococcus sRNA SpF11
Streptococcus sRNA SpF14
Streptococcus sRNA SpF19
Streptococcus sRNA SpF22
Streptococcus sRNA SpF25
Streptococcus sRNA SpF36
Streptococcus sRNA SpF39
Streptococcus sRNA SpF41
Streptococcus sRNA SpF43
Streptococcus sRNA SpF44
Streptococcus sRNA SpF51
Streptococcus sRNA SpF56
Streptococcus sRNA SpF59 (ldcC RNA)
Streptococcus sRNA SpF61
Streptococcus sRNA SpF66
Streptococcus sRNA SpR08
Streptococcus sRNA SpR10
Streptococcus sRNA SpR14
Streptococcus sRNA SpR18
Streptococcus sRNA SpR19
Streptococcus sRNA SpR20
Bacillus sRNA ncr1015
Bacillus sRNA ncr1175
Bacillus sRNA ncr1241
Bacillus sRNA ncr1575
Bacillus sRNA ncr952
Bacillus sRNA ncr982
Mycobacterium sRNA Ms_AS-1
Actinobacteria sRNA Ms_AS-4
Mycobacterium sRNA Ms_AS-5
Actinobacteria sRNA Ms_AS-8
Mycobacterium sRNA Ms_IGR-2
Mycobacterium sRNA Ms_IGR-4
Actinobacteria sRNA Ms_IGR-7
Mycobacterium sRNA Ms_IGR-8
Actinobacteria sRNA Ms_IGR-5
Rhizobiales sRNA Atu_At1
Rhizobiales sRNA Atu_C10
Rhizobiales sRNA Atu_C3
Rhizobiales sRNA Atu_C4
EcpR1
Rhizobiales sRNA Atu_C7
Rhizobiales sRNA Atu_C8
Rhizobiales sRNA Atu_C9
Rhizobiales sRNA Atu_L1
Rhizobiales sRNA Atu_L6
Rhizobiales sRNA Atu_Ti1
Rhizobiales sRNA Atu_Ti3
Rhizobiales sRNA Atu_Ti4
5' ureB small RNA
AfaR small RNA
Streptococcus sRNA sagA
Streptococcus sRNA SSRC30
Streptococcus sRNA SSRC34
Streptococcus sRNA SSRC38
Streptococcus sRNA SSRC41
Streptococcus sRNA SSRC8
Vibrio ToxT activated RNA TarA
Vibrio ToxT activated RNA TarB
RnaG sRNA
RcsR1 sRNA
Y RNA-like
snaR-A sRNA
Coxiella burnetii sRNA 1
Coxiella burnetii sRNA 12
Coxiella burnetii sRNA 14
Nucleoid-associated noncoding RNA 4 (CssrE)
Mycobacterium smegmatis small RNA 1
Vibrio alginolyticus sRNA 907
Escherichia coli small RNA (uptR) gene
IhtA sRNA
Brucella melitensis small RNA 0117
mcr7 sRNA
Lactococcus lactis non-coding RNA 147
Rickettsia sRNA 10
tsr1 small RNA
S. aureus tsr24 small RNA
S. aureus tsr25 small RNA
S. aureus tsr26 small RNA
S. aureus tsr31 small RNA
S. aureus tsr32 small RNA
S. aureus tsr33 small RNA
S. aureus Teg23 small RNA
S. pyogenes small RNA 779816
S. pyogenes small RNA 1186876
S. pyogenes small RNA 1786666
Nitrogen stress-induced RNA 8
Nitrogen stress-induced RNA 9
Cyanobacteria heterocyst sRNA
Brucella sRNA CI408
Brucella sRNA CI27
Brucella sRNA CI337
Brucella sRNA CI414
Brucella sRNA CII26
Brucella sRNA CI153
Streptomyces sRNA scr5239
Acinetobacter sRNA 28
Acinetobacter sRNA 25
Acinetobacter sRNA 11
Brucella sRNA 0602
Brucella sRNA 0709
Brucella sRNA 0653
Brucella sRNA 1350
Brucella sRNA 0739
Brucella sRNA 1073
Brucella sRNA 0626
Streptococcus sRNA 8
Streptococcus sRNA 10
Streptococcus sRNA 34
Brucella sRNA 115
Brucella sRNA 119
Brucella sRNA 120
Brucella sRNA 121
Brucella sRNA 140
Brucella sRNA 150
Wolbachia sRNA 46
Wolbachia sRNA 59
Shigella small RNA 1
Hfq-regulated sRNA 1
Regulator of motility and amylovoran A
Hfq-regulated sRNA 12
Hfq-regulated sRNA 13
Hfq-regulated sRNA 10
Hfq-regulated sRNA 21
Enterococcus sRNA EF3314_EF3315
Enterococcus sRNA EF0820_EF0821
Enterococcus sRNA EF1368_EF1369
Enterococcus sRNA EF0408_EF0409
Enterococcus sRNA EF0605_EF0606
Enterococcus sRNA EF0869_EF0870
S. pyogenes small RNA MOSES4
S. pyogenes small RNA Spy490483c
S. pyogenes small RNA Spy491311c
S. pyogenes small RNA Spy491738
S. pyogenes small RNA Spy490380c
Ruegeria cis2 sRNA
Ruegeria cis8 sRNA
Ruegeria cis52 sRNA
Ruegeria cis90 sRNA
Ruegeria trans44 sRNA
Cag non-coding RNA1
Singlet oxygen resistance RNA Y
Salmonella enterica Typhi npcRNA 3
Salmonella enterica Typhi npcRNA 143
MicL sRNA
Brucella BSR0441 sRNA
Sense overlapping transcript RNA 0042 (sot)
Sense overlapping transcript RNA 2652 (sot)
ncRv12659 sRNA
Yersinia sRNA 35
Small pathogenicity island RNA X
Streptomyces sRNA 4677
Yersinia sRNA 141
Enterohemorrhagic E. coli sRNA 41
Nitrogen stress-induced RNA 4
Burkholderia sRNA 1
Burkholderia sRNA 19
Burkholderia sRNA 39
psm_mec locus RNA
RalR antitoxin
Nitrogen regulated small RNA
Teg49 sRNA
Anti GcvB sRNA
Anti stx2 sRNA
TeloSII non coding RNA 30
TeloSII non coding RNA 33
TeloSII non coding RNA 40
TeloSII non coding RNA 43
TeloSII non coding RNA 45
TeloSII non coding RNA 49
Epstein-Barr virus EBER2
Mycoplasma sRNA MCS4
Haemophilus regulatory RNA responsive to iron
Aggregatibacter sRNA JA01
Aggregatibacter sRNA JA02
Aggregatibacter sRNA JA03
Aggregatibacter sRNA JA04
Corynebacterium sRNA 105
Soft rot Enterobacteriaceae Rev 41 sRNA
Francisella sRNA A
Francisella sRNA B
Wolbachia sRNA mel02
ES003 sRNA
ES036 (CssrF) sRNA
ES056 sRNA
ES173 sRNA
ES205 sRNA
ES222 sRNA
ES239 sRNA
Erse small RNA
sR035 sRNA
sR084 sRNA
IsrM sRNA
Yersinia sRNA 190
Yersinia sRNA 209
Yersinia sRNA 49
Yersinia sRNA 186/sR026/CsrC
Yersinia sRNA 155(RyfD)
Yersinia sRNA 202
Yersinia sRNA 224
Singlet oxygen resistance RNA X
sodF sRNA
Conserved CCUCCUCCC motif stress-induced RNA 1
Plasmid-encoded Shigella sRNA A
Chromosome-encoded Shigella sRNA A
Chromosome-encoded Shigella sRNA B
Rickettsia sRNA47
RsmW RNA family
Sulfolobus sRNA133
Vibrio RNA IGR5
Streptococcus RNA 266
Legionella RNA 69
Legionella RNA 10
Legionella RNA 17
Streptomyces RNA 6925
Streptomyces RNA 6106
Streptomyces RNA 3920
Streptomyces RNA 4115
Streptomyces RNA 1601
Streptomyces RNA 2736
Streptomyces RNA 5676
Streptomyces RNA 3202
Vibrio RNA VqmR
Burkholderia RNA 11
Burkholderia RNA 14
Burkholderia RNA 7 (anti-hemB)
Enterococcus sRNA 55
Enterococcus sRNA 68 (Lacto-3 RNA)
Enterococcus sRNA 70
Enterococcus sRNA A1
Enterococcus sRNA 1C
Enterococcus sRNA 64
Enterococcus sRNA B11
Yersinia sRNA 197
Yersinia sRNA 206
Yersinia sRNA 100
Leptospira sRNA 30_292
Leptospira sRNA 30_255
Actinobacillus sRNA 08
Actinobacillus sRNA 11
Actinobacillus sRNA 14
Neisseria sRNA 84
Enterococcus sRNA 1300
Enterococcus sRNA 2410
Enterococcus sRNA 30
Burkholderia sRNA 16 (Bc_KC_sr1)
Burkholderia sRNA 11
Burkholderia sRNA 37
Burkholderia sRNA 25
Burkholderia sRNA 35
Burkholderia sRNA 54
sRNA regulator of biofilms A
Neisseria metabolic switch regulator b (RcoF1/NgncR163)
Mesorhizobail RNA 7
Mesorhizobail RNA 10
Mesorhizobail RNA 15
Mesorhizobail RNA 25
Mesorhizobail RNA 36
Burkholderia sRNA 2
Burkholderia sRNA 7
Mycobacterium sRNA 6715
Bacillus sRNA 1
Pseudomonas sRNA 6
Small pathogenicity island RNA C (srn_3610)
Staphylococcus sRNA 35 (srn_0335)
Staphylococcus sRNA 414
Staphylococcus sRNA 774
Staphylococcus sRNA 808
Aggregatibacter sRNA 20
Aggregatibacter sRNA 54
Aggregatibacter sRNA 82
Aggregatibacter sRNA 41
Aggregatibacter sRNA 22
Aggregatibacter sRNA 69
Archaeal Small RNA 41
Archaeal Small RNA 154
Listeria sRNA rli117
RT-14 RNA
skipping-rope RNA
6A RNA
DUF2693-FD RNA
Actino-ugpB RNA
Actinomyces-1 RNA
Bacilli-1 RNA
Betaproteobacteria-1 RNA
ARRPOF RNA
caiA RNA
che1 RNA
Chloroflexus-1 RNA
Clostridiales-2 RNA
COG2827 RNA
COG3943 RNA
Clostridiales-3 RNA
Bacteroidales-2 RNA
c4-2 RNA
Corio-PBP RNA
cow-rumen-1 RNA
cow-rumen-2 RNA
cow-rumen-4 RNA
Cupriavidus-1 RNA
D12-methyl RNA
dfrA-dnaX RNA
EGFOA RNA
DUF2693 RNA
EFASI RNA
drum RNA
DUF3800-II RNA
DUF3800-III RNA
DUF3800-IV RNA
DUF3800-V RNA
CyVA-1 RNA
DUF3268 RNA
DUF3800-VII RNA
DUF3800-IX RNA
DUF3800-I RNA
EGFOA-assoc-1 RNA
emrB-Lactobacillus RNA
Enterococcus-1 RNA
DUF3800-XI RNA
Flavobacterium-1 RNA
freshwater-1 RNA
Fibrobacter-1 RNA
DUF3800-X RNA
ftsZ-DE RNA
FuFi-1 RNA
GA-cis RNA
GEBRO RNA
gntR-DTE RNA
gut-2 RNA
IMPDH RNA
IMES-5 RNA
int-alpA RNA
HOLDH RNA
IS605-orfB-II RNA
LOOT RNA
Lacto-phage-1 RNA
M23 RNA
Mahella-1 RNA
mcrA RNA
Methylophilales-1 RNA
Mu-gpT-DE RNA
nadA RNA
Transposase-1 RNA
Transposase-2 RNA
RT-12 RNA
RT-13 RNA
RT-15 RNA
RT-16 RNA
RT-17 RNA
RT-18 RNA
RT-10 RNA
rpfG RNA
RT-4 RNA
RT-5 RNA
RT-6 RNA
RT-7 RNA
RT-8 RNA
salivarius-1 RNA
nrdJ RNA
nqrA-Marinomonas RNA
osmY RNA
PAGEV RNA
poplar-1 RNA
porB RNA
Prevotella-2 RNA
Proteo-phage-1 RNA
proV RNA
Pseudomonadales-1 RNA
RAGATH-16 RNA
RAGATH-20 RNA
RAGATH-24 RNA
RAGATH-25 RNA
RAGATH-26 RNA
RAGATH-28 RNA
OTKONC RNA
RAGATH-30 RNA
RAGATH-35 RNA
raiA-hairpin RNA
uxuA RNA
Streptomyces-metK RNA
RAGATH-18 RNA
IS605-orfB-I RNA
COG3610-DE RNA
RT-3 RNA
ssNA-helicase RNA
RT-19 RNA
DUF3800-VIII RNA
Streptomyces-metH RNA
RT-2 RNA
MISL RNA
RT-9 RNA
dinG RNA
cow-rumen-3 RNA
DUF2815 RNA
abiF RNA
ROOL RNA
Parabacteroides-1 RNA
cold-seep-1 RNA
Clostridium-PBP RNA
Ocean-VII RNA
queA RNA
LAGLIDADG-2 RNA
RAGATH-17 RNA
RAGATH-19 RNA
RAGATH-21 RNA
RAGATH-22 RNA
RAGATH-23 RNA
RAGATH-27 RNA
RAGATH-31 RNA
RAGATH-33 RNA
RAGATH-34 RNA
RAGATH-36 RNA
RAGATH-7-assoc RNA
RT-11 RNA
saliva-tongue-1 RNA
Methylosinus-1 RNA
throat-1 RNA
Zeta-pan RNA
Staphylococcus-1 RNA
Poribacteria-1 RNA
RT-1 RNA
KDPG-aldolase RNA
